Kennedy, McNamara and Rusk moved ahead with the Jupiters matter by making plans to bring it up with Italian and Turkish defense ministers at the NATO meeting in Paris in December 1962. The goal would be to persuade them of the obsolescence of the Jupiters, the dangers that they posed during the Cuban crisis and in future crises, and the need for “better arrangements,” such as “a rearrangement of Polaris deployments.”

President Kennedy continued to monitor the Jupiter missiles problem. During a meeting with Rusk a few weeks later, McNamara explained that President Kennedy, who he had seen in Palm Beach on December 27, had asked him what steps were being taken “to remove the Jupiters.” Consistent with that, McNamara favored the “earliest possible date” and asked whether a “deadline” could be set for April 1 to begin the removals.

Seymour Weiss would push back against any efforts to remove the Jupiters, but he and others realized that President Kennedy had a “keen interest” in the matter and that Secretary of Defense McNamara had ordered that action be taken (assigning his General Counsel John McNaughton to take the lead). Nevertheless Weiss and Assistant Secretary of State William Tyler presented Secretary of State Rusk with a memorandum making the case against action on the Jupiters or at least postponing their removal until a “later time.” Paralleling arguments made during the crisis by Ambassadors Hare and Reinhardt, Tyler pointed to the “symbolic and psychological importance” of the Jupiter deployments. While Tyler noted parenthetically that the Italians had “given indications of a disposition to work toward the eventual removal of the Jupiters,” the U.S. could not phase them out “without general Alliance agreement,” including Italy and Turkey’s consent, “unless we are prepared to lay ourselves open to the charge of abrogation of specific or implied agreements.” Rusk was in the know on the secret deal, but his reference to a “later time” was consistent with it and signing the memo would have placated Tyler and Weiss.

That some officials in the State Department’s European Affairs bureau were convinced that Kennedy had approved a trade of the Jupiters in Turkey puzzled State Department official Seymour Weiss, who was convinced that the higher-ups has rejected a trade. In this memo, Weiss asked a colleague, Jeffrey Kitchen, to get an “accurate reading” on the matter.

In an “eyes only” response to a State Department query about the Jupiters, U.S. Ambassador Raymond Hare observed that “if proper means could be found, good case could be made for removal of Jupiters from Turkey as counter for removal of Soviet missiles from Cuba.” Yet, withdrawing the missiles as part of a Cuban Missile Crisis arrangement would pose a problem that was “partly psycho-political” and “partly substantive.” With reference to the “psycho-political” problem, Hare’s explanation was framed ethnocentrically: The Turks “are proud, courageous people who do not understand concept or process of compromise.” In that context, the U.S. would lose much “if in process of Jupiter removal [the] Turks should get the impression that their interests as an ally were being traded off in order to appease an enemy.” He recommended several alternative solutions to the problem; for example, if the missiles are phased out, the U.S. could provide Turkey with a backup, such as the proposed Multilateral Force (MLF) or Polaris missiles. If Italy gave up its Jupiters, he suggests, that could help with an approach to Turkey. 

On October 26, 1962, as the Cuban Missile Crisis is unfolding, U.S. Ambassador G. Frederick Reinhardt replied to a State Department inquiry about possible Italian reactions to withdrawal of the Jupiters, stating that they “would probably be manageable,” but also recommending early consultations with the Italian government if they were to “form part of negotiated settlement.” In particular, Reinhardt suggested offsetting the withdrawal with gestures to appeal to the Italian government’s craving for status, such as (a) presenting the removal as an Italian contribution to the relaxation of East-West tensions, (b) some kind of “big power consultation” between the U.S. and Italy, coupled with assurances on “the presence of Polaris submarines in the Mediterranean,” (c) “public emphasis on Italy’s role in NATO in order to counter-balance loss of value which missiles have for Italy in calling attention to its role and position in alliance,” and (d) a promise to halt further reductions of U.S. military commitments in Italy. In short, Reinhardt saw a phase-out as a possibility but something to be “be very carefully handled.”

Bulgaria's Charge d' Affaires to the US Kiril Shterev writes to the Bulgarian Ministry of Foreign Affairs explaining that the US planned on stationing B47 bombers in Turkey once the Jupiter missiles are removed from Turkey. Shterev cites journalist Paul Scott as his source for the information about the display of the Unites States' military presence.

Bulgarian General Consul in Istanbul Dimo Karadimov reports to the Bulgarian Foreign Ministry news of new ballistic missiles in Turkey. Specifically, Karadimov notes that the US military will replace Jupiter missiles with Polaris missiles within the year. Karadimov cannot confirm NATO's involvement.